Index

_

__init__() (brainmaze_bci2000.bci2000.BCI2000Reader method)

_accl_channels (brainmaze_bci2000.bci2000.BCI2000Reader attribute) _amplification_factor_values (brainmaze_bci2000.bci2000.BCI2000Reader attribute)

A

ABExitHandler (class in brainmaze_zmq.abstract) ABPublisherHandler (class in brainmaze_zmq.abstract) ABReplyHandler (class in brainmaze_zmq.abstract) ABRequestHandler (class in brainmaze_zmq.abstract) ABSubscriberHandler (class in brainmaze_zmq.abstract)

amplification_factor (brainmaze_bci2000.bci2000.BCI2000Reader property) amplification_factor() (brainmaze_bci2000.bci2000.BCI2000Reader method) Attention1D_MIL (class in brainmaze_torch.models_generic) attenuate() (brainmaze_eeg.features.feature_extraction.SleepSpectralFeatureExtractor method) augment_features() (in module brainmaze_eeg.features.utils)

B

balance_classes() (in module brainmaze_eeg.features.utils) bci2000_to_mefd() (in module brainmaze_bci2000.bids) BCI2000Reader (class in brainmaze_bci2000.bci2000) brainmaze_bci2000.bci2000 module brainmaze_bci2000.bids module brainmaze_eeg.classifiers module brainmaze_eeg.crp module brainmaze_eeg.features module brainmaze_eeg.features.dataset module brainmaze_eeg.features.feature_extraction module brainmaze_eeg.features.spectral_features module brainmaze_eeg.features.time_domain_features module brainmaze_eeg.features.utils module brainmaze_eeg.features.wave_detector module

brainmaze_eeg.hypnogram module brainmaze_eeg.preprocessing module brainmaze_eeg.scikit_modules module brainmaze_torch.models_generic module brainmaze_torch.seizure_detection module brainmaze_utils.files module brainmaze_utils.signal module brainmaze_utils.stat module brainmaze_utils.types module brainmaze_utils.vector module brainmaze_zmq.abstract module brainmaze_zmq.utils module buffer() (in module brainmaze_utils.signal)

C

capitalize_words() (in module brainmaze_bci2000.bids) ccep_proj() (in module brainmaze_eeg.crp) channel_data_rate_thresholding() (in module brainmaze_eeg.preprocessing) channels (brainmaze_bci2000.bci2000.BCI2000Reader property) channels() (brainmaze_bci2000.bci2000.BCI2000Reader method) check_port() (in module brainmaze_zmq.utils) combine_gauss_distributions() (in module brainmaze_utils.stat) combine_mvgauss_distributions() (in module brainmaze_utils.stat)

compare_datasets() (in module brainmaze_eeg.features.dataset) continuous_learning (brainmaze_eeg.scikit_modules.ZScoreModule attribute) convert_sourcedata_bci2000_to_bids() (in module brainmaze_bci2000.bids) correct_certainty() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) correct_hypnogram() (in module brainmaze_eeg.hypnogram) correct_rem() (in module brainmaze_eeg.hypnogram) create_folder() (in module brainmaze_utils.files) create_template() (brainmaze_eeg.classifiers.Mapper method) crp_method() (in module brainmaze_eeg.crp)

D

data_accelerometry (brainmaze_bci2000.bci2000.BCI2000Reader property) data_accelerometry() (brainmaze_bci2000.bci2000.BCI2000Reader method) data_eeg (brainmaze_bci2000.bci2000.BCI2000Reader property) data_eeg() (brainmaze_bci2000.bci2000.BCI2000Reader method) decimate() (brainmaze_utils.signal.LowFrequencyFilter method) (in module brainmaze_utils.signal) delta_t_stats() (brainmaze_eeg.features.wave_detector.WaveDetector class method) design_filters() (brainmaze_eeg.features.feature_extraction.SleepSpectralFeatureExtractor method) (brainmaze_utils.signal.LowFrequencyFilter method)

detect_flat_line_segments() (in module brainmaze_eeg.preprocessing) detect_outlier_segments() (in module brainmaze_eeg.preprocessing) detect_powerline_segments() (in module brainmaze_eeg.preprocessing) detect_stim_segments() (in module brainmaze_eeg.preprocessing) detect_waves() (brainmaze_eeg.features.wave_detector.WaveDetector method) detection_dilatation() (in module brainmaze_eeg.preprocessing) detrend() (in module brainmaze_utils.signal) DicToObj() (in module brainmaze_utils.types) DictToObjDict() (in module brainmaze_utils.types) do_median_filtration() (in module brainmaze_eeg.hypnogram)

E

extract_features() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method)

extract_features_bulk() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) extraction_functions (brainmaze_eeg.features.feature_extraction.SleepSpectralFeatureExtractor property)

F

FeatureAugmentorModule (class in brainmaze_eeg.scikit_modules) fft_filter() (in module brainmaze_utils.signal) fill_nonrem_voids() (in module brainmaze_eeg.hypnogram) fill_same_voids() (in module brainmaze_eeg.hypnogram) fill_sleep_voids() (in module brainmaze_eeg.hypnogram) fill_wakerem_voids() (in module brainmaze_eeg.hypnogram) filter_powerline() (in module brainmaze_eeg.preprocessing) filter_signal() (brainmaze_utils.signal.LowFrequencyFilter method) find_category_outliers() (in module brainmaze_eeg.features.utils) find_peaks() (in module brainmaze_utils.signal) fit() (brainmaze_eeg.classifiers.KDEBayesianCausalModel method) (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) (brainmaze_eeg.classifiers.SleepStructureClassifier method) (brainmaze_eeg.scikit_modules.FeatureAugmentorModule method) (brainmaze_eeg.scikit_modules.Log10Module method) (brainmaze_eeg.scikit_modules.LogModule method) (brainmaze_eeg.scikit_modules.PCAModule method) (brainmaze_eeg.scikit_modules.PCAModuleSVD method) (brainmaze_eeg.scikit_modules.ZScoreModule method)

fit_genetic() (brainmaze_eeg.classifiers.Mapper method) fit_genetic_likelihood() (brainmaze_eeg.classifiers.Mapper method) fit_map() (brainmaze_eeg.classifiers.Mapper method) fit_optimize() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) fit_transform() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) (brainmaze_eeg.scikit_modules.FeatureAugmentorModule method) (brainmaze_eeg.scikit_modules.Log10Module method) (brainmaze_eeg.scikit_modules.LogModule method) (brainmaze_eeg.scikit_modules.PCAModule method) (brainmaze_eeg.scikit_modules.PCAModuleSVD method) (brainmaze_eeg.scikit_modules.ZScoreModule method) forward() (brainmaze_torch.models_generic.Attention1D_MIL method) (brainmaze_torch.models_generic.ResLayer1D method) (brainmaze_torch.models_generic.ResLayer2D method) fs (brainmaze_bci2000.bci2000.BCI2000Reader property) fs() (brainmaze_bci2000.bci2000.BCI2000Reader method)

G

get_awakening_time() (in module brainmaze_eeg.hypnogram) get_changing_state_posteriors() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_changing_state_priors() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_changing_state_probabilities() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_class_count() (in module brainmaze_eeg.features.utils) get_classification_scores() (in module brainmaze_eeg.features.utils) get_datarate() (in module brainmaze_utils.signal) get_fell_asleep_time() (in module brainmaze_eeg.hypnogram) get_files() (in module brainmaze_utils.files) get_folders() (in module brainmaze_utils.files) get_hypnogram_datarate() (in module brainmaze_eeg.hypnogram) get_mutual_vectors() (in module brainmaze_utils.vector) get_number_of_awakenings() (in module brainmaze_eeg.hypnogram) get_number_of_sleep_stages() (in module brainmaze_eeg.hypnogram) get_prob_to_change() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_probabilities() (brainmaze_eeg.classifiers.Mapper method) get_rem_latency() (in module brainmaze_eeg.hypnogram)

get_rot_2d() (in module brainmaze_utils.vector) get_rot_3d() (in module brainmaze_utils.vector) get_rot_3d_x() (in module brainmaze_utils.vector) get_rot_3d_y() (in module brainmaze_utils.vector) get_rot_3d_z() (in module brainmaze_utils.vector) get_stage_times() (in module brainmaze_eeg.hypnogram) get_stage_times_dataset() (in module brainmaze_eeg.hypnogram) get_stat_indices() (in module brainmaze_eeg.crp) get_state() (brainmaze_bci2000.bci2000.BCI2000Reader method), [1] get_state_change_posterior() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_state_change_prior() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_state_idx() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_state_priors() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) get_time_by_key() (in module brainmaze_eeg.hypnogram) get_transition_counts() (in module brainmaze_eeg.hypnogram) get_transition_matrix() (in module brainmaze_eeg.hypnogram) get_transition_matrix_dataset() (in module brainmaze_eeg.hypnogram)

I

infer_seizure_probability() (in module brainmaze_torch.seizure_detection)

is_sleep_complete() (in module brainmaze_eeg.hypnogram) is_socket_alive() (in module brainmaze_zmq.utils)

K

KDEBayesianCausalModel (class in brainmaze_eeg.classifiers) KDEBayesianModel (class in brainmaze_eeg.classifiers) KDEBayesianModelNC (class in brainmaze_eeg.classifiers) kill_exit_handler() (brainmaze_zmq.abstract.ABExitHandler method) kill_publisher_handler() (brainmaze_zmq.abstract.ABPublisherHandler method) kill_reply_handler() (brainmaze_zmq.abstract.ABReplyHandler method)

kill_request_handler() (brainmaze_zmq.abstract.ABRequestHandler method) kill_subscriber_handler() (brainmaze_zmq.abstract.ABSubscriberHandler method) kl_divergence() (in module brainmaze_utils.stat) kl_divergence_mv() (in module brainmaze_utils.stat) kl_divergence_nonparametric() (in module brainmaze_utils.stat) kt_pca() (in module brainmaze_eeg.crp)

L

load_trained_model() (in module brainmaze_torch.seizure_detection) Log10Module (class in brainmaze_eeg.scikit_modules)

LogModule (class in brainmaze_eeg.scikit_modules) LowFrequencyFilter (class in brainmaze_utils.signal)

M

map() (brainmaze_eeg.classifiers.Mapper method) Mapper (class in brainmaze_eeg.classifiers) mask_segments_with_nans() (in module brainmaze_eeg.preprocessing) max_stats() (brainmaze_eeg.features.wave_detector.WaveDetector class method) mean (brainmaze_eeg.scikit_modules.ZScoreModule attribute) mean_bands() (in module brainmaze_eeg.features.spectral_features) mean_frequency() (in module brainmaze_eeg.features.spectral_features) median_frequency() (in module brainmaze_eeg.features.spectral_features) min_stats() (brainmaze_eeg.features.wave_detector.WaveDetector class method) module brainmaze_bci2000.bci2000 brainmaze_bci2000.bids brainmaze_eeg.classifiers brainmaze_eeg.crp brainmaze_eeg.features brainmaze_eeg.features.dataset brainmaze_eeg.features.feature_extraction brainmaze_eeg.features.spectral_features brainmaze_eeg.features.time_domain_features brainmaze_eeg.features.utils brainmaze_eeg.features.wave_detector brainmaze_eeg.hypnogram brainmaze_eeg.preprocessing brainmaze_eeg.scikit_modules brainmaze_torch.models_generic brainmaze_torch.seizure_detection brainmaze_utils.files brainmaze_utils.signal brainmaze_utils.stat brainmaze_utils.types brainmaze_utils.vector brainmaze_zmq.abstract brainmaze_zmq.utils

multi_class (brainmaze_eeg.scikit_modules.ZScoreModule attribute) MultiChannelMVGaussBayesClassifier (class in brainmaze_eeg.classifiers) multivariate_normal_ (class in brainmaze_eeg.classifiers) MVGaussBayesianCausalModel (class in brainmaze_eeg.classifiers) MVGaussBayesianModel (class in brainmaze_eeg.classifiers)

N

N (brainmaze_eeg.scikit_modules.ZScoreModule attribute) nandecimate() (in module brainmaze_utils.signal) non_normalized_entropy() (in module brainmaze_eeg.features.spectral_features)

non_normalized_entropy_bands() (in module brainmaze_eeg.features.spectral_features) normalized_entropy() (in module brainmaze_eeg.features.spectral_features) normalized_entropy_bands() (in module brainmaze_eeg.features.spectral_features)

O

ObjDict (class in brainmaze_utils.types) ObjDictToDict() (in module brainmaze_utils.types)

on_recv_data() (brainmaze_zmq.abstract.ABSubscriberHandler method) on_recv_exit() (brainmaze_zmq.abstract.ABExitHandler method)

P

PCAModule (class in brainmaze_eeg.scikit_modules) PCAModuleSVD (class in brainmaze_eeg.scikit_modules) pdf() (brainmaze_eeg.classifiers.multivariate_normal_ method) ping_ip() (in module brainmaze_zmq.utils) pk2pk_stats() (brainmaze_eeg.features.wave_detector.WaveDetector class method) plot_hypnogram() (in module brainmaze_eeg.hypnogram) predict() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) predict_signal() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) (brainmaze_eeg.classifiers.SleepClassifierWrapper method)

predict_signal_scores() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) prefilter() (brainmaze_eeg.features.feature_extraction.SleepSpectralFeatureExtractor method) preprocess_input() (in module brainmaze_torch.seizure_detection) preprocess_signal() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) print_classification_scores() (in module brainmaze_eeg.features.utils) print_sleep_score() (in module brainmaze_eeg.hypnogram) process_signal() (brainmaze_eeg.features.feature_extraction.SleepSpectralFeatureExtractor method) PSD() (in module brainmaze_utils.signal) publish() (brainmaze_zmq.abstract.ABPublisherHandler method)

R

recording_duration_seconds (brainmaze_bci2000.bci2000.BCI2000Reader property) recording_duration_seconds() (brainmaze_bci2000.bci2000.BCI2000Reader method) reference_channels (brainmaze_bci2000.bci2000.BCI2000Reader property) reference_channels() (brainmaze_bci2000.bci2000.BCI2000Reader method) relative_bands() (in module brainmaze_eeg.features.spectral_features) remove_class() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) remove_features() (in module brainmaze_eeg.features.utils) remove_folder() (in module brainmaze_utils.files) remove_samples() (in module brainmaze_eeg.features.utils)

replace_annotations() (in module brainmaze_eeg.features.utils) replace_nans_with_median() (in module brainmaze_eeg.preprocessing) reply() (brainmaze_zmq.abstract.ABReplyHandler method) request_reply() (brainmaze_zmq.abstract.ABRequestHandler method) resample() (in module brainmaze_utils.signal) reset_probabilities() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method) ResLayer1D (class in brainmaze_torch.models_generic) ResLayer2D (class in brainmaze_torch.models_generic) rotate() (in module brainmaze_utils.vector)

S

scale() (in module brainmaze_utils.vector) score_night() (in module brainmaze_eeg.hypnogram) scores() (brainmaze_eeg.classifiers.KDEBayesianCausalModel method) (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.classifiers.MultiChannelMVGaussBayesClassifier method) (brainmaze_eeg.classifiers.SleepStructureClassifier method) send_exit_signal() (in module brainmaze_zmq.utils) setup_exit_handler() (brainmaze_zmq.abstract.ABExitHandler method) setup_publisher_handler() (brainmaze_zmq.abstract.ABPublisherHandler method) setup_publisher_socket() (in module brainmaze_zmq.utils) setup_pull_socket() (in module brainmaze_zmq.utils) setup_push_socket() (in module brainmaze_zmq.utils) setup_reply_handler() (brainmaze_zmq.abstract.ABReplyHandler method) setup_reply_socket() (in module brainmaze_zmq.utils) setup_request_handler() (brainmaze_zmq.abstract.ABRequestHandler method) setup_request_socket() (in module brainmaze_zmq.utils)

setup_subscriber_handler() (brainmaze_zmq.abstract.ABSubscriberHandler method) setup_subscriber_socket() (in module brainmaze_zmq.utils) SleepClassifierWrapper (class in brainmaze_eeg.classifiers) SleepSpectralFeatureExtractor (class in brainmaze_eeg.features.feature_extraction) SleepStageProbabilityMarkovChainFilter (class in brainmaze_eeg.classifiers) SleepStructureClassifier (class in brainmaze_eeg.classifiers) slope_stats() (brainmaze_eeg.features.wave_detector.WaveDetector class method) split_files() (in module brainmaze_utils.files) start_time (brainmaze_bci2000.bci2000.BCI2000Reader property) start_time() (brainmaze_bci2000.bci2000.BCI2000Reader method) stat() (brainmaze_eeg.features.wave_detector.WaveDetector static method) states (brainmaze_bci2000.bci2000.BCI2000Reader property) states() (brainmaze_bci2000.bci2000.BCI2000Reader method) std (brainmaze_eeg.scikit_modules.ZScoreModule attribute) stimulation (brainmaze_bci2000.bci2000.BCI2000Reader property) stimulation() (brainmaze_bci2000.bci2000.BCI2000Reader method) stop() (brainmaze_zmq.abstract.ABExitHandler method)

T

tkeo() (in module brainmaze_eeg.features.time_domain_features) train() (brainmaze_eeg.classifiers.SleepClassifierWrapper method) trainable (brainmaze_eeg.scikit_modules.ZScoreModule attribute) transform() (brainmaze_eeg.classifiers.KDEBayesianModel method) (brainmaze_eeg.classifiers.KDEBayesianModelNC method) (brainmaze_eeg.scikit_modules.FeatureAugmentorModule method) (brainmaze_eeg.scikit_modules.Log10Module method) (brainmaze_eeg.scikit_modules.LogModule method) (brainmaze_eeg.scikit_modules.PCAModuleSVD method) (brainmaze_eeg.scikit_modules.ZScoreModule method)

transition_matrix_to_change_matrix() (in module brainmaze_eeg.hypnogram) translate() (in module brainmaze_utils.vector) TwoWayDict (class in brainmaze_utils.types)

U

unify_sampling_frequency() (in module brainmaze_utils.signal)

upsample() (brainmaze_utils.signal.LowFrequencyFilter method)

V

valid_dataset_index_by_duration() (in module brainmaze_eeg.hypnogram)

W

WaveDetector (class in brainmaze_eeg.features.wave_detector)

weight_probabilities() (brainmaze_eeg.classifiers.SleepStageProbabilityMarkovChainFilter method)

Z

zscore() (in module brainmaze_eeg.features.utils)

ZScoreModule (class in brainmaze_eeg.scikit_modules)